Sequencing-Related
Papers of Note, November 2007
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Author(s) | Title | Citation |
Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, et al. |
Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. |
PLoS Biol. 2007 Nov 6;5(11):e310. |
Callanan M, Kaleta P, O'Callaghan J, O'Sullivan O, Jordan K, McAuliffe O, Sangrador-Vegas A, Slattery L, Fitzgerald GF, Beresford T, Ross RP. | Genome sequence of Lactobacillus helveticus: an organism distinguished by selective gene loss and IS element expansion. | J Bacteriol. 2007 Nov 9 [Epub ahead of print] |
Chen J, Agrawal V, Rattray M, West MA, St Clair DA, Michelmore RW, Coughlan SJ, Meyers BC. | A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. | BMC Genomics. 2007 Nov 12;8(1):414 [Epub ahead of print] |
Drosophila 12 Genomes Consortium, Clark AG, Eisen MB, Smith DR, Bergman CM, et al. | Evolution of genes and genomes on the Drosophila phylogeny. | Nature. 2007 Nov 8;450(7167):203-18. |
Ellison DW, Clark TR, Sturdevant DE, Virtaneva K, Porcella SF, Hackstadt T. | Genomic comparison of virulent Rickettsia rickettsii Sheila Smith and avirulent Rickettsia rickettsii Iowa. | Infect Immun.2007 Nov 19 [Epub ahead of print] |
Eveland AL, McCarty DR, Koch KE. | Transcript profiling by 3' UTR sequencing resolves expression of gene families. | Plant Physiol.2007 Nov 16 [Epub ahead of print] |
Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE, Torriani SF, McDonald BA, Oliver RP. | Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum. | Plant Cell. 2007 Nov 16 [Epub ahead of print] |
Highlander SK, Hulten KG, Qin X, Jiang H, Yerrapragada S, et al. | Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. | BMC Microbiol. 2007 Nov 6;7(1):99 [Epub ahead of print] |
Johnson PL, Slatkin M. | Accounting for bias from sequencing error in population genetic estimates. | Mol Biol Evol. 2007 Nov 2 [Epub ahead of print] |
Korshunova Y, Maloney RK, Lakey N, Citek RW, Bacher B, Budiman A, Ordway JM, McCombie WR, Leon J, Jeddeloh JA, McPherson JD. | Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA. | Genome Res. 2007 Nov 21 [Epub ahead of print] |
Lijavetzky D, Cabezas JA, Ibanez A, Rodriguez V, Martinez-Zapater JM. | High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology. | BMC Genomics. 2007 Nov 19;8(1):424 [Epub ahead of print] |
Macas J, Neumann P, Navratilova A. | Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula. | BMC Genomics. 2007 Nov 21;8(1):427 [Epub ahead of print] |
Pettersson E, Zajac P, Ståhl PL, Jacobsson JA, Fredriksson R, Marcus C, Schiöth HB, Lundeberg J, Ahmadian A. | Allelotyping by massively parallel pyrosequencing of SNP-carrying trinucleotide threads. | Hum Mutat. 2007 Nov 9 [Epub ahead of print] |
Pontius JU, Mullikin JC, Smith DR; Agencourt Sequencing Team, Lindblad-Toh K, Gnerre S, et al. | Initial sequence and comparative analysis of the cat genome. | Genome Res. 2007 Nov;17(11):1675-89. |
Saenz HL, Engel P, Stoeckli MC, Lanz C, Raddatz G, et al. | Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors. | Nat Genet. 2007 Dec;39(12):1469-76. Epub 2007 Nov 25. |
Sram J, Sommer SS, Liu Q. | Microarray-based DNA resequencing using 3' blocked primers. | Anal Biochem.2007 Nov 4 [Epub ahead of print] |
Sundquist A, Bigdeli S, Jalili R, Druzin ML, Waller S, Pullen KM, El-Sayed YY, Taslimi MM, Batzoglou S, Ronaghi M. | Bacterial flora typing with deep, targeted, chip-based pyrosequencing. | BMC Microbiol. 2007 Nov 30;7(1):108 [Epub ahead of print] |
Thomson NR, Holden MT, Carder C, Lennard N, Lockey SJ, et al. | Chlamydia trachomatis: Genome sequence analysis of lymphogranuloma venereum isolates. | Genome Res. 2007 Nov 21 [Epub ahead of print] |
Torres TT, Metta M, Ottenwälder B, Schlötterer C. | Gene expression profiling by massively parallel sequencing. | Genome Res. 2007 Nov 21 [Epub ahead of print] |
Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, et al. | Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. | Nature. 2007 Nov 22;450(7169):560-5. |
Wegley L, Edwards R, Rodriguez-Brito B, Liu H, Rohwer F. | Metagenomic analysis of the microbial community associated with the coral Porites astreoides. | Environ Microbiol. 2007 Nov;9(11):2707-19. |
Wu HC, Astier Y, Maglia G, Mikhailova E, Bayley H. | Protein nanopores with covalently attached molecular adapters. | J Am Chem Soc. 2007 Nov 30 [Epub ahead of print] |
Xu J, Saunders CW, Hu P, Grant RA, Boekhout T, Kuramae EE, et al. | Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens. | Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18730-5. Epub 2007 Nov 13. |