PAG-XV Presentations Involving Next-Generation Sequencing
Abstract Title	Lead Author	Organization(s)
A Dense SNP-Based Genetic Linkage Map of Grapevine (Vitis vinifera L.) Anchored to the Sequenced Genome of Pinot Noir	Riccardo Velasco	ASMA Research Center, Myriad Genetics, University of Padova, Parco Tecnologico Padano
An Early Glimpse Into the Cassava Genome by 454 Sequencing	Steve Rounsley	BIO5 Institute & Department of Plant Sciences, University of Arizona
Fagaceae Genomic Database (FGD): An Integrated Web-Based Resource for Tree Genomics	Stephen Ficklin	Clemson University Genomics Institute, North Carolina State University Department of Forestry, American Chestnut Foundation, Molecular Tree Breeding Services, Pennsylvania State University Department of Horticulture
It's a Knockout: Massively Parallel Mapping of Mutator Insertion Sites from the MTM Population	Paulo Ferreira	Cold Spring Harbor Laboratory
Genome-Wide Analysis of Sorghum and Maize Small RNA Transcriptome Using 454 Sequencing Identified Conserved and Lineage Specific Gene Families	Christopher Maher	Cold Spring Harbor Laboratory, Stony Brook University, University of Missouri-Columbia, Delaware Biotechnology Institute, USDA-ARS
Phytophthora Resistance in Soybean	Madan Bhattacharyya	Iowa State University
Gene Discovery and Annotation Using LCM-454 Transcriptome Sequencing	Scott Emrich	Iowa State University, Donald Danforth Plant Science Center
SNP Discovery Via 454 Transcriptome Sequencing	Scott Emrich	Iowa State University, Donald Danforth Plant Science Center
Application of 454 Technology (Pyrosequencing) in Transcript Analyses of the Soybean-Phytophthora Sojae Interaction	Madan Bhattacharyya	Iowa State University, University of Wisconsin-Stevens Point, University of Oklahoma, USDA-ARS
Keypoint: A New Mutation Scanning Technology by Massive Parallel Sequencing	Arjen van Tunen	Keygene
Application of Crops Technology for SNP Marker Discovery in Maize	Antoine Janssen	Keygene
Novel Sequence-Based Mutation Screening and SNP Detection Technologies	Michiel van Eijk	Keygene
Sequence-Based AFLP Detection Using Solexa's Clonal Single Molecule Array (CSMA) Technology	Michiel van Eijk	Keygene, Solexa
Profiling Small Regulatory RNAs in Wood Formation	Ying-Hsuan Sun	North Carolina State University Department of Forestry and Environmental Resources
Dissecting the Small RNAome of Arabidopsis	Noah Fahlgren	Oregon State University
GS20 454 Sequencing of the Chestnut Transcriptome: Results of a Pilot Study	John Carlson	Pennsylvania State University School of Forest Resources, State University of New York, Clemson University Genomics Institute, North Carolina State University Bioinformatics Research Center
Identification and Distribution of microRNAs from a Basal Eudicot (Eschscholzia californica) and Two Basal Angiosperm Species (Nuphar advena and Aristolochia fimbriata)	Abdelali Barakat	Pennsylvania State University, University of Georgia-Athens
The Maize TILLING Project	Rita-Ann Monde	Purdue University, Fred Hutchinson Cancer Research Center, University of Minnesota, Iowa State University, USDA-Plant Gene Expression Center, University of California-Davis
A Transposon Insertion Site Analysis	Michiel Vandenbussche	Radboud University, Keygene
A Transposon Insertion Site Analysis Procedure	Michiel Vandenbussche	Radboud University, Keygene
CSRdb: A Small RNA Database for Cereals	Cameron Johnson	University of California-Davis, University of South Carolina-Columbia, University of California-San Francisco
Endogenous Small RNAs in Plant Immunity	Surekha Katiyar-Agarwal	University of California-Riverside, University of California-Berkeley
Brassica Genome Sequencing: Applications for Australian Canola Improvement	Jacqueline Batley	Victorian AgriBiosciences Centre