Sequencing-Related Papers of Note, March 2007
Authors Title Citation
Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature
2007 Mar 29;446(7135):572-6.
Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell
2007 Mar 23;128(6):1089-103. Epub 2007 Mar 8.
Challacombe JF, Altherr MR, Xie G, et al. The Complete Genome Sequence of Bacillus thuringiensis Al Hakam. J Bacteriol.
2007 Mar 2;
[Epub ahead of print]
Endo K, Takahashi M, Masuko K, Inoue K, Akahane Y, Okamoto H. Full-length sequences of subgenotype IIIA and IIIB hepatitis A virus isolates: Characterization of genotype III HAV genomes. Virus Res.
2007 Mar 19;
[Epub ahead of print]
Farrar MD, Howson KM, Bojar RA, West D, Towler JC, Parry J, Pelton K, Holland KT. Genome Sequence and Analysis of a Propionibacterium acnes Bacteriophage. J Bacteriol.
2007 Mar 30;
[Epub ahead of print]
Feng L, Wang W, Cheng J, Ren Y, Zhao G, Gao C, Tang Y, Liu X, Han W, Peng X, Liu R, Wang L. Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc Natl Acad Sci U S A.
2007 Mar 27;104(13):5602-7. Epub 2007 Mar 19.
Fredriksson S, Baner J, Dahl F, Chu A, Ji H, Welch K, Davis RW. Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector. Nucleic Acids Res.
2007 Mar 13;
[Epub ahead of print]
Goh S, Ong PF, Song KP, Riley TV, Chang BJ. The complete genome sequence of Clostridium difficile phage phiC2 and comparisons to phiCD119 and inducible prophages of CD630. Microbiology.
2007 Mar;153(Pt 3):676-85.
Jain M, Shrager J, Harris EH, Halbrook R, Grossman AR, Hauser C, Vallon O. EST assembly supported by a draft genome sequence: an analysis of the Chlamydomonas reinhardtii transcriptome Nucleic Acids Res.
2007 Apr 1;
[Epub ahead of print]
Jeffries TW, Grigoriev IV, Grimwood J, et al. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol.
2007 Mar;25(3):319-326. Epub 2007 Mar 4.
Johnstone C, Nakagawa H. Large-scale sequencing of the colorectal cancer genome unearths novel pathways to tumorigenesis and provides potential druggable targets for cancer therapy. Gastroenterology.
2007 Mar;132(3):1186-9.
Liu FX, Ruan XL, He YW, Li HP, Hu JS. Complete nucleotide sequence of rice gall dwarf virus genome segment S7. Arch Virol.
2007 Mar 19;
[Epub ahead of print]
Mandoiu II, Prajescu C. High-throughput SNP genotyping by SBE/SBH. IEEE Trans Nanobioscience.
2007 Mar;6(1):28-35.
Oliynyk M, Samborskyy M, Lester JB, Mironenko T, Scott N, Dickens S, Haydock SF, Leadlay PF. Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL2338. Nat Biotechnol.
2007 Apr;25(4):447-453. Epub 2007 Mar 18.
Rusch DB, Halpern AL, Sutton G, et al. The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol.
2007 Mar 13;5(3):e77
[Epub ahead of print]
Smith MG, Gianoulis TA, Pukatzki S, Mekalanos JJ, Ornston LN, Gerstein M, Snyder M. New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis Genes Dev.
2007 Mar 1;21(5):601-14.
Trombetti GA, Bonnal RJ, Rizzi E, De Bellis G, Milanesi L. Data handling strategies for high throughput pyrosequencers. BMC Bioinformatics.
2007 Mar 8;8 Suppl 1:S22.
Weber AP, Weber KL, Carr K, Wilkerson C, Ohlrogge JB. Sampling the Arabidopsis Transcriptome with Massively-Parallel Pyrosequencing. Plant Physiol.
2007 Mar 9;
[Epub ahead of print]
Xie G, Bruce DC, Challacombe JF, et al. Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Appl Environ Microbiol.
2007 Mar 30;
[Epub ahead of print]
Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE. Role of RNA polymerase IV in plant small RNA metabolism. Proc Natl Acad Sci U S A.
2007 Mar 13;104(11):4536-41. Epub 2007 Mar 5.