|
Sequencing-Related
Papers of Note, June 2007
|
||
| Authors | Title | Citation |
| Bhinge AA, Kim J, Euskirchen GM, Snyder M, Iyer VR. | Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE). | Genome
Res. 2007 Jun;17(6):910-6 |
| Duchaud E, Boussaha M, Loux V, et al. | Complete genome sequence of the fish pathogen Flavobacterium psychrophilum. | Nat
Biotechnol. 2007 Jun 24 (e-pub ahead of print) |
| Euskirchen GM, Rozowsky JS, Wei CL, Lee WH, Zhang ZD, Hartman S, Emanuelsson O, Stolc V, Weissman S, Gerstein MB, Ruan Y, Snyder M. | Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies. | Genome
Res. 2007 Jun;17(6):898-909 |
| Farrar MD, Howson KM, Bojar RA, West D, Towler JC, Parry J, Pelton K, Holland KT. | Genome sequence and analysis of a Propionibacterium acnes bacteriophage. | J
Bacteriol. 2007 Jun;189(11):4161-7 |
| Hoffmann C, Minkah N, Leipzig J, Wang G, Arens MQ, Tebas P, Bushman FD. | DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations. | Nucleic
Acids Res. 2007 Jun 18 (e-pub ahead of print) |
| Johnson DS, Mortazavi A, Myers RM, Wold B. | Genome-wide mapping of in vivo protein-DNA interactions. | Science. 2007 Jun 8;316(5830):1497-502 |
| Kelleher CT, Chiu R, Shin H, et al. | A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation. | Plant
J. 2007 Jun;50(6):1063-78. |
| Kim JB, Porreca GJ, Song L, Greenway SC, Gorham JM, Church GM, Seidman CE, Seidman JG. | Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy. | Science.
2007 Jun 8;316(5830):1481-4 |
| Lee SH, Vigliotti VS, Vigliotti JS, Pappu S. | Routine human papillomavirus genotyping by DNA sequencing in community hospital laboratories. | Infect
Agent Cancer. 2007 Jun 5;2:11 |
| Peacock CS, Seeger K, Harris D, et al. | Comparative genomic analysis of three Leishmania species that cause diverse human disease. | Nat
Genet. 2007 Jul;39(7):839-47 |
| Robertson G, Hirst M, Bainbridge M, et al. | Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. | Nat
Methods. 2007 Jun 11 (e-pub ahead of print) |
| Samuel BS, Hansen EE, Manchester JK, Coutinho PM, Henrissat B, Fulton R, Latreille P, Kim K, Wilson RK, Gordon JI. | Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut. | Proc
Natl Acad Sci USA. 2007 Jun 19;104(25):10643-8 |
| Stensvold CR, Traub RJ, von Samson-Himmelstjerna G, Jespersgaard C, Nielsen HV, Thompson RC. | Blastocystis: subtyping isolates using pyrosequencing technology. | Exp
Parasitol. 2007 Jun;116(2):111-9 |
| Udwary DW, Zeigler L, Asolkar RN, Singan V, Lapidus A, Fenical W, Jensen PR, Moore BS. | Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica. | Proc
Natl Acad Sci USA. 2007 Jun 19;104(25):10376-81 |
| Wang C, Mitsuya Y, Gharizadeh B, Ronaghi M, Shafer RW. | Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistance. | Genome
Res. 2007 Jun 28 (e-pub ahead of print) |