Sequencing-Related
Papers of Note, January 2008
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Authors | Title | Citation |
Bailo E, Deckert V.. |
Tip-enhanced Raman spectroscopy of single RNA strands: towards a novel direct-sequencing method. |
Angew Chem Int Ed Engl. 2008;47(9):1658-61. |
Bentley SD, Corton C, Brown SE, Barron A, et al. | Genome of the actinomycete plant pathogen Clavibacter michiganensis subspecies sepedonicus suggests recent niche adaptation. | J Bacteriol. 2008 Jan 11 [Epub ahead of print] |
Brockman W, Alvarez P, Young S, Garber M, et al. | Quality scores and SNP detection in sequencing-by-synthesis systems. | Genome Res. 2008 Jan 22 [Epub ahead of print] |
Coarfa C, Milosavljevic A. | Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies. | Pac Symp Biocomput. 2008; 102-13. |
Cockroft SL, Chu J, Amorin M, Ghadiri MR. | A single-molecule nanopore device detects DNA polymerase activity with single-nucleotide resolution. | J Am Chem Soc. 2008 Jan 23;130(3):818-20. Epub 2008 Jan 1. |
Döring A, Weese D, Rausch T, Reinert K. | SeqAn an efficient, generic C++ library for sequence analysis. | BMC Bioinformatics. 2008 Jan 9;9:11. |
Fredlake CP, Hert DG, Kan CW, Chiesl TN, et al. | Ultrafast DNA sequencing on a microchip by a hybrid separation mechanism that gives 600 bases in 6.5 minutes. | Proc
Natl Acad Sci U S A. 2008 Jan 15;105(2):476-81. Epub 2008 Jan 9. |
Gartemann KH, Abt B, Bekel T, Burger A, et al. | The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subspecies michiganensis NCPPB382 reveals a large island involved in pathogenicity. | J Bacteriol. 2008 Jan 11 [Epub ahead of print] |
Hafner M, Landgraf P, Ludwig J, Rice A, et al. | Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing. | Methods. 2008 Jan;44(1):3-12. |
Hillier LW, Marth GT, Quinlan AR, Dooling D, et al. | Whole-genome sequencing and variant discovery in C. elegans. | Nat Methods. 2008 Feb;5(2):183-8. Epub 2008 Jan 20. |
Hong CP, Kwon SJ, Kim JS, Yang TJ, Park BS, Lim YP. | Progress in understanding and sequencing the genome of Brassica rapa. | Int J Plant Genomics. 2008;2008:582837. |
Jex AR, Hu M, Littlewood DT, Waeschenbach A, Gasser RB. | Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda). | BMC Genomics. 2008 Jan 11;9(1):11 [Epub ahead of print] |
Korlach J, Marks PJ, Cicero RL, Gray JJ, et al. | Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures. | Proc
Natl Acad Sci U S A. 2008 Jan 29;105(4):1176-81. Epub 2008 Jan 23. |
Li R, Li Y, Kristiansen K, Wang J. | SOAP: short oligonucleotide alignment program. | Bioinformatics. 2008 Jan 28 [Epub ahead of print] |
Meyer M, Stenzel U, Hofreiter M. | Parallel tagged sequencing on the 454 platform. | Nat Protoc. 2008;3(2):267-78. |
Olson AJ, Brennecke J, Aravin AA, Hannon GJ, Sachidanandam R. | Analysis of large-scale sequencing of small RNAs. | Pac Symp Biocomput. 2008; 126-36. |
Piganeau G, Desdevises Y, Derelle E, Moreau H. | Picoeukaryotic sequences in the Sargasso Sea metagenome. | Genome Biol. 2008 Jan 7;9(1):R5 [Epub ahead of print] |
Reynolds B, Miller R, Williams JG, Anderson JP. | Synthesis and stability of novel terminal phosphate-labeled nucleotides. | Nucleosides Nucleotides Nucleic Acids. 2008;27(1):18-30. |
Seedorf H, Fricke WF, Veith B, Brüggemann H, Liesegang H, et al. | The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features. | Proc
Natl Acad Sci U S A. 2008 Feb 12;105(6):2128-33. Epub 2008 Jan 24. |
Tyler DM, Okamura K, Chung WJ, Hagen JW, Berezikov E, Hannon GJ, Lai EC. | Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci. | Genes Dev. 2008 Jan 1;22(1):26-36. |
Williamson SJ, Rusch DB, Yooseph S, Halpern AL, et al. | The Sorcerer II global ocean sampling expedition: metagenomic characterization of viruses within aquatic microbial samples. | PLoS ONE. 2008 Jan 23;3(1):e1456. |
Wommack KE, Bhavsar J, Ravel J. | Metagenomics: Read length matters. | Appl Environ Microbiol. 2008 Jan 11 [Epub ahead of print] |
Wu JQ, Du J, Rozowsky J, Zhang Z, et al. | Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome. | Genome Biol. 2008 Jan 3;9(1):R3 [Epub ahead of print] |
Xu Z, Zhou Y, Li L, Zhou R, Xiao S, Wan Y, et al. | Genome biology of Actinobacillus pleuropneumoniae JL03, an isolate of serotype 3 prevalent in China. | PLoS ONE. 2008 Jan 16;3(1):e1450. |