Sequencing-Related
Papers of Note, April 2008
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Authors | Title | Citation |
Alcaraz LD, Olmedo G, Bonilla G, Cerritos R, et al. | Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5803-8. Epub 2008 Apr 11. | |
Bashir A, Volik S, Collins C, Bafna V, Raphael BJ. | Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer. | PLoS Comput Biol. 2008 Apr 11;4(4):e1000051. |
Blow MJ, Zhang T, Woyke T, Spelle CF, et al. | Identification of the source of ancient remains through genomic sequencing. | Genome Res. 2008 Apr 21. [Epub ahead of print] |
Brinkmeyer-Langford C, Raudsepp T, Gustafson-Seabury A, Chowdhary BP. | A BAC contig map over the proximal approximately 3.3 Mb region of horse chromosome 21. | Cytogenet Genome Res. 2008;120(1-2):164-72. Epub 2008 Apr 30. |
Burnside J, Ouyang M, Anderson A, Bernberg E, et al. | Deep sequencing of chicken microRNAs. | BMC Genomics. 2008 Apr 22;9:185. |
Campbell PJ, Stephens PJ, Pleasance ED, O'Meara S, et al. | Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. | Nat Genet. 2008 Apr 27. [Epub ahead of print] |
Crossman LC, Gould VC, Dow JM, Vernikos GS, et al. | The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants. | Genome Biol. 2008 Apr 17;9(4):R74. [Epub ahead of print] |
Datema E, Mueller LA, Buels R, Giovannoni JJ, et al. | Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato. | BMC Plant Biol. 2008 Apr 11;8:34. |
Eriksson N, Pachter L, Mitsuya Y, Rhee SY, et al. | Viral population estimation using pyrosequencing. | PLoS Comput Biol. 2008 Apr 25;4(4):e1000074. |
Fedorova ND, Khaldi N, Joardar VS, Maiti R, et al. | Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. | PLoS Genet. 2008 Apr 11;4(4):e1000046. |
Friedländer MR, Chen W, Adamidi C, Maaskola J, et al. | Discovering microRNAs from deep sequencing data using miRDeep. | Nat Biotechnol. 2008 Apr;26(4):407-15. |
Harris TD, Buzby PR, Babcock H, Beer E, et al. | Single-molecule DNA sequencing of a viral genome. | Science. 2008 Apr 4;320(5872):106-9. |
Hongoh Y, Sharma VK, Prakash T, Noda S, et al. | Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell. | Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5555-60. Epub 2008 Apr 7. |
Iacono M, Villa L, Fortini D, Bordoni R, et al. | Whole genome pyrosequencing of an epidemic multidrug resistant Acinetobacter baumannii of the European clone II. | Antimicrob Agents Chemother. 2008 Apr 14. [Epub ahead of print] |
Kumaresan P, Yang CJ, Cronier SA, Blazej RG, Mathies RA. | High-throughput single copy DNA amplification and cell analysis in engineered nanoliter droplets. | Anal Chem. 2008 May 15;80(10):3522-9. Epub 2008 Apr 15. |
La Scola B, Elkarkouri K, Li W, Wahab T, et al. | Rapid comparative genomic analysis for clinical microbiology: The Francisella tularensis paradigm. | Genome Res. 2008 May;18(5):742-50. Epub 2008 Apr 11. |
Li K, Brownley A, Stockwell T, Beeson K, et al. | Novel computational methods for increasing PCR primer design effectiveness in directed sequencing. | BMC Bioinformatics. 2008 Apr 11;9(1):191. [Epub ahead of print] |
Lin SW, Chang GL, Lin CH. | Novel wavelength-resolved fluorescence detection for a high-throughput capillary electrophoresis system under a diascopic configuration. | J Chromatogr A. 2008 May 23;1192(1):198-201. Epub 2008 Apr 3. |
Ming R, Hou S, Feng Y, Yu Q, et al. | The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). | Nature. 2008 Apr 24;452(7190):991-6. |
Montgomery KT, Iartchouck O, Li L, Perera A, et al. | Mutation detection using automated fluorescence-based sequencing. | Curr Protoc Hum Genet. 2008 Apr;Chapter 7:Unit7.9 |
Norton JM, Klotz MG, Stein LY, Arp DJ, et al. | Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment. | Appl Environ Microbiol. 2008 Apr 4. [Epub ahead of print] |
Parker NJ, Parker AG. | Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data. | Source Code Biol Med. 2008 Apr 18;3:5. |
Sattley WM, Madigan MT, Swingley WD, Cheung PC, et al. | The genome of Heliobacterium modesticaldum, a phototrophic representative of the Firmicutes containing the simplest photosynthetic apparatus. | J Bacteriol. 2008 Apr 25. [Epub ahead of print] |
Schutzer SE, Schlater LR, Ronning CM, DeShazer D, et al. | Characterization of clinically-attenuated Burkholderia mallei by whole genome sequencing: candidate strain for exclusion from Select Agent lists. | PLoS ONE. 2008 Apr 30;3(4):e2058. |
Stinear TP, Seemann T, Harrison PF, Jenkin GA, et al. | Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis. | Genome Res. 2008 May;18(5):729-41. Epub 2008 Apr 10. |
Takarada H, Sekine M, Kosugi H, Matsuo Y, et al. | Complete genome sequence of the soil actinomycete Kocuria rhizophila. | J Bacteriol. 2008 Apr 11. [Epub ahead of print] |
Tringe SG, Zhang T, Liu X, Yu Y, et al. | The airborne metagenome in an indoor urban environment. | PLoS ONE. 2008 Apr 2;3(4):e1862. |
Turnbaugh PJ, Bäckhed F, Fulton L, Gordon JI. | Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. | Cell Host Microbe. 2008 Apr 17;3(4):213-23. |
Wang F, Wang J, Jian H, Zhang B, et al. | Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3. | PLoS ONE. 2008 Apr 9;3(4):e1937. |
Wang GP, Garrigue A, Ciuffi A, Ronen K, et al. | DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer. | Nucleic Acids Res. 2008 Apr 14. [Epub ahead of print] |
Wheeler DA, Srinivasan M, Egholm M, Shen Y, et al. | The complete genome of an individual by massively parallel DNA sequencing. | Nature. 2008 Apr 17;452(7189):872-6. |