Sequencing-Related Papers of Note, December 2007
Authors Title Citation
Auernik KS, Maezato Y, Blum PH, Kelly RM.

Genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching metabolism.

Appl Environ Microbiol. 2007 Dec 14 [Epub ahead of print]
Bovee D, Zhou Y, Haugen E, Wu Z, Hayden HS, Gillett W, Tuzun E, et al. Closing gaps in the human genome with fosmid resources generated from multiple individuals. Nat Genet. 2008 Jan;40(1):96-101. Epub 2007 Dec 23.
Chaisson MJ, Pevzner PA. Short read fragment assembly of bacterial genomes. Genome Res. 2007 Dec 14 [Epub ahead of print]
Chen ZJ, Scheffler BE, Dennis E, Triplett BA, et al. Toward sequencing cotton (gossypium) genomes. Plant Physiol. 2007 Dec;145(4):1303-10.
Foote SJ, Bossé JT, Bouevitch AB, Langford PR, Young NM, Nash JH. The complete genome sequence of Actinobacillus pleuropneumoniae L20 (serotype 5b). J Bacteriol. 2007 Dec 7 [Epub ahead of print]
Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, et al. Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet. 2007 Dec 21;3(12):e231 [Epub ahead of print]
Ma X, Liu Y, Gowen BB, Graviss EA, Clark AG, Musser JM. Full-exon resequencing reveals toll-like receptor variants contribute to human susceptibility to tuberculosis disease. PLoS ONE. 2007 Dec 19;2(12):e1318.
McCutcheon JP, Moran NA Parallel genomic evolution and metabolic interdependence in an ancient symbiosis. Proc Natl Acad Sci
U S A.
2007 Dec 4;104(49):19392-7.
Meyer M, Briggs AW, Maricic T, Höber B, Höffner B, Krause J, Weihmann A, Pääbo S, Hofreiter M. From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing. Nucleic Acids Res. 2007 Dec 15 [Epub ahead of print]
Miller WG, Parker CT, Rubenfield M, Mendz GL, Wösten MM, et al. The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. PLoS ONE. 2007 Dec 26;2(12):e1358.
Misumi O, Yoshida Y, Nishida K, Fujiwara T, Sakajiri T, Hirooka S, Nishimura Y, Kuroiwa T. Genome analysis and its significance in four unicellular algae, Cyanidioshyzon merolae, Ostreococcus tauri, Chlamydomonas reinhardtii, and Thalassiosira pseudonana. J Plant Res. 2008 Jan;121(1):3-17. Epub 2007 Dec 12.
Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science. 2008 Jan 4;319(5859):64-9. Epub 2007 Dec 13.
Sakurai T, Plata G, Rodriguez-Zapata F, Seki M, et al. Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response. BMC Plant Biol. 2007 Dec 20;7(1):66 [Epub ahead of print]
Schatz MC, Trapnell C, Delcher AL, Varshney A. High-throughput sequence alignment using graphics processing units. BMC Bioinformatics. 2007 Dec 10;8(1):474 [Epub ahead of print]
Sievert SM, Scott KM, Klotz MG, Chain PS, Hauser LJ, et al. The genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. Appl Environ Microbiol. 2007 Dec 7 [Epub ahead of print]
Sigalov G, Comer J, Timp G, Aksimentiev A. Detection of DNA sequences using an alternating electric field in a nanopore capacitor. Nano Lett. 2008 Jan;8(1):56-63. Epub 2007 Dec 11.
Valenzuela-Encinas C, Neria-González I, Alcántara-Hernández RJ, et al. Phylogenetic analysis of the archaeal community in an alkaline-saline soil of the former lake Texcoco (Mexico). Extremophiles. 2007 Dec 21 [Epub ahead of print]
Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE. 2007 Dec 19;2(12):e1326.
Wu HC, Astier Y, Maglia G, Mikhailova E, Bayley H. Protein nanopores with covalently attached molecular adapters. J Am Chem Soc. 2007 Dec 26;129(51):16142-8. Epub 2007 Nov 30.