Sequencing-Related
Papers of Note, February 2008
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Authors | Title | Citation |
Anderson I, Rodriguez J, Susanti D, Porat I, et al. | J Bacteriol. 2008 Feb 8 [Epub ahead of print] | |
Chen J, Kim YC, Jung YC, Xuan Z, Dworkin G, et al. | Scanning the human genome at kilobase resolution. | Genome Res. 2008 Feb 21 [Epub ahead of print] |
Cokus SJ, Feng S, Zhang X, Chen Z, et al. | Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. | Nature 2008 Feb 17 [Epub ahead of print] |
Durfee T, Nelson R, Baldwin S, Plunkett G 3rd, et al. | The complete genome sequence of Escherichia coli DH10B: Insights into the biology of a laboratory workhorse. | J Bacteriol. 2008 Feb 1 [Epub ahead of print] |
Frumkin D, Wasserstrom A, Itzkovitz S, Harmelin A, et al. | Amplification of multiple genomic loci from single cells isolated by laser micro-dissection of tissues. | BMC Biotechnol. 2008 Feb 20;8(1):17 [Epub ahead of print] |
Fullwood MJ, Tan JJ, Ng PW, Chiu KP, et al. | The use of multiple displacement amplification to amplify complex DNA libraries. | Nucleic Acids Res. 2008 Feb 19 [Epub ahead of print] |
Goto T, Yamashita A, Hirakawa H, Matsutani M, et al. | Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen. | DNA Res. 2008 Feb 29;15(1):39-47. Epub 2008 Feb 7. |
Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R. | Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. | Nat Methods. 2008 Mar;5(3):235-7. Epub 2008 Feb 10. |
Hu X, Fan W, Han B, Liu H, Zheng D, et al. | Complete genome sequence of the mosquitocidal bacterium Bacillus sphaericus C3-41 and comparison with closely related Bacillus species. | J Bacteriol. 2008 Feb 22 [Epub ahead of print] |
Kim JF, Jeong H, Lee JS, Choi SH, et al. | The complete genome sequence of Leuconostoc citreum KM20. | J Bacteriol. 2008 Feb 15 [Epub ahead of print] |
King N, Westbrook MJ, Young SL, Kuo A, et al. | The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. | Nature 2008 Feb 14;451(7180):783-8. |
Loriaux MM, Levine RL, Tyner JW, Frohling S, et al. | High-throughput sequence analysis of the tyrosine kinome in acute myeloid leukemia. | Blood 2008 Feb 5 [Epub ahead of print] |
Malde K. | The effect of sequence quality on sequence alignment. | Bioinformatics 2008 Feb 23 [Epub ahead of print] |
Mathee K, Narasimhan G, Valdes C, Qiu X, et al. | Dynamics of Pseudomonas aeruginosa genome evolution. | Proc Natl Acad Sci U S A 2008 Feb 26;105(8):3100-5. Epub 2008 Feb 19. |
McKenna P, Hoffmann C, Minkah N, Aye PP, et al. | The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis. | PLoS Pathog. 2008 Feb 1;4(2):e20 [Epub ahead of print] |
Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, et al. | Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. | Genome Res. 2008 Feb 19 [Epub ahead of print] |
Pelletier E, Kreimeyer A, Bocs S, Rouy Z, et al. | "Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division. | J Bacteriol. 2008 Feb 1 [Epub ahead of print] |
Picardeau M, Bulach DM, Bouchier C, Zuerner RL, et al. | Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis. | PLoS ONE 2008 Feb 13;3(2):e1607. |
Rohde C, Zhang Y, Jurkowski TP, Stamerjohanns H, Reinhardt R, Jeltsch A. | Bisulfite sequencing Data Presentation and Compilation (BDPC) web server a useful tool for DNA methylation analysis. | Nucleic Acids Res. 2008 Feb 22 [Epub ahead of print] |
Smith AD, Xuan Z, Zhang MQ. | Using quality scores and longer reads improves accuracy of Solexa read mapping. | BMC Bioinformatics 2008 Feb 28;9(1):128 [Epub ahead of print] |
Steinberg KM, Okou DT, Zwick ME. | Applying rapid genome sequencing technologies to characterize pathogen genomes. | Anal Chem. 2008 Feb 1;80(3):520-8. |
Sugarbaker DJ, Richards WG, Gordon GJ, Dong L, et al. | Transcriptome sequencing of malignant pleural mesothelioma tumors. | Proc Natl Acad Sci U S A 2008 Mar 4;105(9):3521-6. Epub 2008 Feb 26. |
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK. | Identification of novel and candidate miRNAs in rice by high-throughput sequencing. | BMC Plant Biol. 2008 Feb 29;8(1):25 [Epub ahead of print] |
Timko MP, Rushton PJ, Laudeman TW, Bokoviec MT, et al. | Sequencing and analysis of the gene-rich space of cowpea. | BMC Genomics 2008 Feb 27;9(1):103 [Epub ahead of print] |
Turcatti G, Romieu A, Fedurco M, Tairi AP. | A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis. | Nucleic Acids Res. 2008 Mar;36(4):e25. Epub 2008 Feb 7. |
Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, et al. | Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. | Mol Ecol. 2008 Feb 5 [Epub ahead of print] |