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Sequencing-Related
Papers of Note, December 2007
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| Authors | Title | Citation |
| Auernik KS, Maezato Y, Blum PH, Kelly RM. | Appl Environ Microbiol. 2007 Dec 14 [Epub ahead of print] | |
| Bovee D, Zhou Y, Haugen E, Wu Z, Hayden HS, Gillett W, Tuzun E, et al. | Closing gaps in the human genome with fosmid resources generated from multiple individuals. | Nat Genet. 2008 Jan;40(1):96-101. Epub 2007 Dec 23. |
| Chaisson MJ, Pevzner PA. | Short read fragment assembly of bacterial genomes. | Genome Res. 2007 Dec 14 [Epub ahead of print] |
| Chen ZJ, Scheffler BE, Dennis E, Triplett BA, et al. | Toward sequencing cotton (gossypium) genomes. | Plant Physiol. 2007 Dec;145(4):1303-10. |
| Foote SJ, Bossé JT, Bouevitch AB, Langford PR, Young NM, Nash JH. | The complete genome sequence of Actinobacillus pleuropneumoniae L20 (serotype 5b). | J Bacteriol. 2007 Dec 7 [Epub ahead of print] |
| Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, et al. | Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. | PLoS Genet. 2007 Dec 21;3(12):e231 [Epub ahead of print] |
| Ma X, Liu Y, Gowen BB, Graviss EA, Clark AG, Musser JM. | Full-exon resequencing reveals toll-like receptor variants contribute to human susceptibility to tuberculosis disease. | PLoS ONE. 2007 Dec 19;2(12):e1318. |
| McCutcheon JP, Moran NA | Parallel genomic evolution and metabolic interdependence in an ancient symbiosis. | Proc
Natl Acad Sci U S A. 2007 Dec 4;104(49):19392-7. |
| Meyer M, Briggs AW, Maricic T, Höber B, Höffner B, Krause J, Weihmann A, Pääbo S, Hofreiter M. | From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing. | Nucleic Acids Res. 2007 Dec 15 [Epub ahead of print] |
| Miller WG, Parker CT, Rubenfield M, Mendz GL, Wösten MM, et al. | The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. | PLoS ONE. 2007 Dec 26;2(12):e1358. |
| Misumi O, Yoshida Y, Nishida K, Fujiwara T, Sakajiri T, Hirooka S, Nishimura Y, Kuroiwa T. | Genome analysis and its significance in four unicellular algae, Cyanidioshyzon merolae, Ostreococcus tauri, Chlamydomonas reinhardtii, and Thalassiosira pseudonana. | J Plant Res. 2008 Jan;121(1):3-17. Epub 2007 Dec 12. |
| Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, et al. | The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. | Science. 2008 Jan 4;319(5859):64-9. Epub 2007 Dec 13. |
| Sakurai T, Plata G, Rodriguez-Zapata F, Seki M, et al. | Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response. | BMC Plant Biol. 2007 Dec 20;7(1):66 [Epub ahead of print] |
| Schatz MC, Trapnell C, Delcher AL, Varshney A. | High-throughput sequence alignment using graphics processing units. | BMC Bioinformatics. 2007 Dec 10;8(1):474 [Epub ahead of print] |
| Sievert SM, Scott KM, Klotz MG, Chain PS, Hauser LJ, et al. | The genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. | Appl Environ Microbiol. 2007 Dec 7 [Epub ahead of print] |
| Sigalov G, Comer J, Timp G, Aksimentiev A. | Detection of DNA sequences using an alternating electric field in a nanopore capacitor. | Nano Lett. 2008 Jan;8(1):56-63. Epub 2007 Dec 11. |
| Valenzuela-Encinas C, Neria-González I, Alcántara-Hernández RJ, et al. | Phylogenetic analysis of the archaeal community in an alkaline-saline soil of the former lake Texcoco (Mexico). | Extremophiles. 2007 Dec 21 [Epub ahead of print] |
| Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, et al. | A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. | PLoS ONE. 2007 Dec 19;2(12):e1326. |
| Wu HC, Astier Y, Maglia G, Mikhailova E, Bayley H. | Protein nanopores with covalently attached molecular adapters. | J Am Chem Soc. 2007 Dec 26;129(51):16142-8. Epub 2007 Nov 30. |